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A
Vandal OH
,
Roberts JA
,
Odaira T
,
Schnappinger D
,
Nathan CF
,
Ehrt S
. 2009.
Acid-susceptible mutants of Mycobacterium tuberculosis share hypersusceptibility to cell wall and oxidative stress and to the host environment.
.
J Bacteriol. 191(2):625-31.
de Carvalho LPedro S
,
Zhao H
,
Dickinson CE
,
Arango NM
,
Lima CD
,
Fischer SM
,
Ouerfelli O
,
Nathan C
,
Rhee K
. 2010.
Activity-based metabolomic profiling of enzymatic function: identification of Rv1248c as a mycobacterial 2-hydroxy-3-oxoadipate synthase.
.
Chem Biol. 17(4):323-32.
Nociari M
,
Ocheretina O
,
Murphy M
,
Falck-Pedersen E
. 2009.
Adenovirus induction of IRF3 occurs through a binary trigger targeting Jun N-terminal kinase and TBK1 kinase cascades and type I interferon autocrine signaling.
.
J Virol. 83(9):4081-91.
Kirkman LA
,
Zhan W
,
Visone J
,
Dziedziech A
,
Singh PK
,
Fan H
,
Tong X
,
Bruzual I
,
Hara R
,
Kawasaki M
et al.
. 2018.
Antimalarial proteasome inhibitor reveals collateral sensitivity from intersubunit interactions and fitness cost of resistance.
.
Proc Natl Acad Sci U S A. 115(29):E6863-E6870.
C
Sinha A
,
Hughes KR
,
Modrzynska KK
,
Otto TD
,
Pfander C
,
Dickens NJ
,
Religa AA
,
Bushell E
,
Graham AL
,
Cameron R
et al.
. 2014.
A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium.
.
Nature. 507(7491):253-257.
Dey AK
,
Cupo A
,
Ozorowski G
,
Sharma VK
,
Behrens A-J
,
Go EP
,
Ketas TJ
,
Yasmeen A
,
Klasse PJ
,
Sayeed E
et al.
. 2018.
cGMP production and analysis of BG505 SOSIP.664, an extensively glycosylated, trimeric HIV-1 envelope glycoprotein vaccine candidate.
.
Biotechnol Bioeng. 115(4):885-899.
Ringe RP
,
Pugach P
,
Cottrell CA
,
LaBranche CC
,
Seabright GE
,
Ketas TJ
,
Ozorowski G
,
Kumar S
,
Schorcht A
,
van Gils MJ
et al.
. 2019.
Closing and Opening Holes in the Glycan Shield of HIV-1 Envelope Glycoprotein SOSIP Trimers Can Redirect the Neutralizing Antibody Response to the Newly Unmasked Epitopes.
.
J Virol. 93(4)
Osborne LC
,
Monticelli LA
,
Nice TJ
,
Sutherland TE
,
Siracusa MC
,
Hepworth MR
,
Tomov VT
,
Kobuley D
,
Tran SV
,
Bittinger K
et al.
. 2014.
Coinfection. Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation.
.
Science. 345(6196):578-82.
Abt MC
,
Osborne LC
,
Monticelli LA
,
Doering TA
,
Alenghat T
,
Sonnenberg GF
,
Paley MA
,
Antenus M
,
Williams KL
,
Erikson J
et al.
. 2012.
Commensal bacteria calibrate the activation threshold of innate antiviral immunity.
.
Immunity. 37(1):158-70.
Hill DA
,
Siracusa MC
,
Abt MC
,
Kim BS
,
Kobuley D
,
Kubo M
,
Kambayashi T
,
Larosa DF
,
Renner ED
,
Orange JS
et al.
. 2012.
Commensal bacteria-derived signals regulate basophil hematopoiesis and allergic inflammation.
.
Nat Med. 18(4):538-46.
Orth P
,
Cordes F
,
Schnappinger D
,
Hillen W
,
Saenger W
,
Hinrichs W
. 1998.
Conformational changes of the Tet repressor induced by tetracycline trapping.
.
J Mol Biol. 279(2):439-47.
Schnappinger D
,
O'Brien KM
,
Ehrt S
. 2015.
Construction of conditional knockdown mutants in mycobacteria.
.
Methods Mol Biol. 1285:151-75.
Cheng Y-W
,
Pincas H
,
Bacolod MD
,
Schemmann G
,
Giardina SF
,
Huang J
,
Barral S
,
Idrees K
,
Khan SA
,
Zeng Z
et al.
. 2008.
CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer.
.
Clin Cancer Res. 14(19):6005-13.
Orth P
,
Schnappinger D
,
Sum PE
,
Ellestad GA
,
Hillen W
,
Saenger W
,
Hinrichs W
. 1999.
Crystal structure of the tet repressor in complex with a novel tetracycline, 9-(N,N-dimethylglycylamido)- 6-demethyl-6-deoxy-tetracycline.
.
J Mol Biol. 285(2):455-61.
Orth P
,
Alings C
,
Schnappinger D
,
Saenger W
,
Hinrichs W
. 1998.
Crystallization and preliminary X-ray analysis of the Tet-repressor/operator complex.
.
Acta Crystallogr D Biol Crystallogr. 54(Pt 1):99-100.
D
McAulay K
,
Saito K
,
Warrier T
,
Walsh KFrances
,
Mathurin LDaniel
,
Royal-Mardi G
,
Lee MHee
,
Ocheretina O
,
Pape JWilliam
,
Fitzgerald DW
et al.
. 2018.
Differentially Detectable Mycobacterium tuberculosis Cells in Sputum from Treatment-Naive Subjects in Haiti and Their Proportionate Increase after Initiation of Treatment.
.
mBio. 9(6)
Torroella-Kouri M
,
Ma X
,
Perry G
,
Ivanova M
,
Cejas PJ
,
Owen JL
,
Iragavarapu-Charyulu V
,
Lopez DM
. 2005.
Diminished expression of transcription factors nuclear factor kappaB and CCAAT/enhancer binding protein underlies a novel tumor evasion mechanism affecting macrophages of mammary tumor-bearing mice.
.
Cancer Res. 65(22):10578-84.
Oh S
,
Park Y
,
Engelhart CA
,
Wallach JB
,
Schnappinger D
,
Arora K
,
Manikkam M
,
Gac B
,
Wang H
,
Murgolo N
et al.
. 2018.
Discovery and Structure-Activity-Relationship Study of N-Alkyl-5-hydroxypyrimidinone Carboxamides as Novel Antitubercular Agents Targeting Decaprenylphosphoryl-β-d-ribose 2'-Oxidase.
.
J Med Chem. 61(22):9952-9965.
Oh S
,
Park Y
,
Engelhart CA
,
Wallach JB
,
Schnappinger D
,
Arora K
,
Manikkam M
,
Gac B
,
Wang H
,
Murgolo N
et al.
. 2018.
Discovery and Structure-Activity-Relationship Study of N-Alkyl-5-hydroxypyrimidinone Carboxamides as Novel Antitubercular Agents Targeting Decaprenylphosphoryl-β-d-ribose 2'-Oxidase.
.
J Med Chem. 61(22):9952-9965.
Botella H
,
Yang G
,
Ouerfelli O
,
Ehrt S
,
Nathan CF
,
Vaubourgeix J
. 2017.
Distinct Spatiotemporal Dynamics of Peptidoglycan Synthesis between Mycobacterium smegmatis and Mycobacterium tuberculosis.
.
mBio. 8(5)
E
Ozorowski G
,
Cupo A
,
Golabek M
,
LoPiccolo M
,
Ketas TA
,
Cavallary M
,
Cottrell CA
,
Klasse PJ
,
Ward AB
,
Moore JP
. 2018.
Effects of Adjuvants on HIV-1 Envelope Glycoprotein SOSIP Trimers .
.
J Virol. 92(13)
Banerjee K
,
Andjelic S
,
Klasse PJohan
,
Kang Y
,
Sanders RW
,
Michael E
,
Durso RJ
,
Ketas TJ
,
Olson WC
,
Moore JP
. 2009.
Enzymatic removal of mannose moieties can increase the immune response to HIV-1 gp120 in vivo.
.
Virology. 389(1-2):108-21.
Klasse PJ
,
Ketas TJ
,
Cottrell CA
,
Ozorowski G
,
Debnath G
,
Camara D
,
Francomano E
,
Pugach P
,
Ringe RP
,
LaBranche CC
et al.
. 2018.
Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques.
.
PLoS Pathog. 14(2):e1006913.
Mesnard L
,
Muthukumar T
,
Burbach M
,
Li C
,
Shang H
,
Dadhania D
,
Lee JR
,
Sharma VK
,
Xiang J
,
Suberbielle C
et al.
. 2016.
Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.
.
PLoS Comput Biol. 12(9):e1005088.
G
Renaud S
,
Hays AP
,
Brannagan TH
,
Sander HW
,
Edgar M
,
Weimer LH
,
Olarte MR
,
Dalakas MC
,
Xiang Z
,
Danon MJ
et al.
. 2005.
Gene expression profiling in chronic inflammatory demyelinating polyneuropathy.
.
J Neuroimmunol. 159(1-2):203-14.
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