Microbiology and Immunology

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Publications

Found 26 results

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2000

Favis R, Day JP, Gerry NP, Phelan C, Narod S, Barany F. 2000. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2.. Nat Biotechnol. 18(5):561-4.

2002

Huang J, Kirk B, Favis R, Soussi T, Paty P, Cao W, Barany F. 2002. An endonuclease/ligase based mutation scanning method especially suited for analysis of neoplastic tissue.. Oncogene. 21(12):1909-21.

Kirk BW, Feinsod M, Favis R, Kliman RM, Barany F. 2002. Single nucleotide polymorphism seeking long term association with complex disease.. Nucleic Acids Res. 30(15):3295-311.

2003

Wabuyele MB, Farquar H, Stryjewski W, Hammer RP, Soper SA, Cheng Y-W, Barany F. 2003. Approaching real-time molecular diagnostics: single-pair fluorescence resonance energy transfer (spFRET) detection for the analysis of low abundant point mutations in K-ras oncogenes.. J Am Chem Soc. 125(23):6937-45.

Overholtzer M, Rao PH, Favis R, Lu X-Y, Elowitz MB, Barany F, Ladanyi M, Gorlick R, Levine AJ. 2003. The presence of p53 mutations in human osteosarcomas correlates with high levels of genomic instability.. Proc Natl Acad Sci U S A. 100(20):11547-52.

2004

Favis R, Huang J, Gerry NP, Culliford A, Paty P, Soussi T, Barany F. 2004. Harmonized microarray/mutation scanning analysis of TP53 mutations in undissected colorectal tumors.. Hum Mutat. 24(1):63-75.

Pincas H, Pingle MR, Huang J, Lao K, Paty PB, Friedman AM, Barany F. 2004. High sensitivity EndoV mutation scanning through real-time ligase proofreading.. Nucleic Acids Res. 32(19):e148.

2005

Favis R, Gerry NP, Cheng Y-W, Barany F. 2005. Applications of the universal DNA microarray in molecular medicine.. Methods Mol Med. 114:25-58.

2006

Cheng Y-W, Shawber C, Notterman D, Paty P, Barany F. 2006. Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay.. Genome Res. 16(2):282-9.

Tsafrir D, Bacolod M, Selvanayagam Z, Tsafrir I, Shia J, Zeng Z, Liu H, Krier C, Stengel RF, Barany F et al.. 2006. Relationship of gene expression and chromosomal abnormalities in colorectal cancer.. Cancer Res. 66(4):2129-37.

2007

Pingle MR, Granger K, Feinberg P, Shatsky R, Sterling B, Rundell M, Spitzer E, Larone D, Golightly LM, Barany F. 2007. Multiplexed identification of blood-borne bacterial pathogens by use of a novel 16S rRNA gene PCR-ligase detection reaction-capillary electrophoresis assay.. J Clin Microbiol. 45(6):1927-35.

Hashimoto M, Barany F, Xu F, Soper SA. 2007. Serial processing of biological reactions using flow-through microfluidic devices: coupled PCR/LDR for the detection of low-abundant DNA point mutations.. Analyst. 132(9):913-21.

Gao H, Huang J, Barany F, Cao W. 2007. Switching base preferences of mismatch cleavage in endonuclease V: an improved method for scanning point mutations.. Nucleic Acids Res. 35(1):e2.

2008

Zeng Z-S, Weiser MR, Kuntz E, Chen C-T, Khan SA, Forslund A, Nash GM, Gimbel M, Yamaguchi Y, Culliford AT et al.. 2008. c-Met gene amplification is associated with advanced stage colorectal cancer and liver metastases.. Cancer Lett. 265(2):258-69.

Cheng Y-W, Pincas H, Bacolod MD, Schemmann G, Giardina SF, Huang J, Barral S, Idrees K, Khan SA, Zeng Z et al.. 2008. CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer.. Clin Cancer Res. 14(19):6005-13.

Das S, Pingle MR, Muñoz-Jordán J, Rundell MS, Rondini S, Granger K, Chang G-JJ, Kelly E, Spier EG, Larone D et al.. 2008. Detection and serotyping of dengue virus in serum samples by multiplex reverse transcriptase PCR-ligase detection reaction assay.. J Clin Microbiol. 46(10):3276-84.

Rondini S, Pingle MR, Das S, Tesh R, Rundell MS, Hom J, Stramer S, Turner K, Rossmann SN, Lanciotti R et al.. 2008. Development of multiplex PCR-ligase detection reaction assay for detection of West Nile virus.. J Clin Microbiol. 46(7):2269-79.

Forslund A, Zeng Z, Qin L-X, Rosenberg S, Ndubuisi MK, Pincas H, Gerald W, Notterman DA, Barany F, Paty PB. 2008. MDM2 gene amplification is correlated to tumor progression but not to the presence of SNP309 or TP53 mutational status in primary colorectal cancers.. Mol Cancer Res. 6(2):205-11.

Bacolod MD, Schemmann GS, Wang S, Shattock R, Giardina SF, Zeng Z, Shia J, Stengel RF, Gerry N, Hoh J et al.. 2008. The signatures of autozygosity among patients with colorectal cancer.. Cancer Res. 68(8):2610-21.

2009

Bacolod MD, Schemmann GS, Giardina SF, Paty P, Notterman DA, Barany F. 2009. Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies.. Cancer Res. 69(3):723-7.

Wang S, Haynes C, Barany F, Ott J. 2009. Genome-wide autozygosity mapping in human populations.. Genet Epidemiol. 33(2):172-80.

2010

Bacolod MD, Barany F. 2010. Gene dysregulations driven by somatic copy number aberrations-biological and clinical implications in colon tumors: a paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology.. J Mol Diagn. 12(5):552-61.

Cheng Y-W, Idrees K, Shattock R, Khan SA, Zeng Z, Brennan CW, Paty P, Barany F. 2010. Loss of imprinting and marked gene elevation are 2 forms of aberrant IGF2 expression in colorectal cancer.. Int J Cancer. 127(3):568-77.

Pingle M, Rundell M, Das S, Golightly LM, Barany F. 2010. PCR/LDR/universal array platforms for the diagnosis of infectious disease.. Methods Mol Biol. 632:141-57.

2011

Bacolod MD, Barany F. 2011. Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition.. Ann Surg Oncol. 18(13):3694-700.