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F Barany
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A
Favis R
,
Gerry NP
,
Cheng Y-W
,
Barany F
. 2005.
Applications of the universal DNA microarray in molecular medicine.
.
Methods Mol Med. 114:25-58.
Wabuyele MB
,
Farquar H
,
Stryjewski W
,
Hammer RP
,
Soper SA
,
Cheng Y-W
,
Barany F
. 2003.
Approaching real-time molecular diagnostics: single-pair fluorescence resonance energy transfer (spFRET) detection for the analysis of low abundant point mutations in K-ras oncogenes.
.
J Am Chem Soc. 125(23):6937-45.
C
Zeng Z-S
,
Weiser MR
,
Kuntz E
,
Chen C-T
,
Khan SA
,
Forslund A
,
Nash GM
,
Gimbel M
,
Yamaguchi Y
,
Culliford AT
et al.
. 2008.
c-Met gene amplification is associated with advanced stage colorectal cancer and liver metastases.
.
Cancer Lett. 265(2):258-69.
Cheng Y-W
,
Pincas H
,
Bacolod MD
,
Schemmann G
,
Giardina SF
,
Huang J
,
Barral S
,
Idrees K
,
Khan SA
,
Zeng Z
et al.
. 2008.
CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer.
.
Clin Cancer Res. 14(19):6005-13.
D
Das S
,
Pingle MR
,
Muñoz-Jordán J
,
Rundell MS
,
Rondini S
,
Granger K
,
Chang G-JJ
,
Kelly E
,
Spier EG
,
Larone D
et al.
. 2008.
Detection and serotyping of dengue virus in serum samples by multiplex reverse transcriptase PCR-ligase detection reaction assay.
.
J Clin Microbiol. 46(10):3276-84.
Rondini S
,
Pingle MR
,
Das S
,
Tesh R
,
Rundell MS
,
Hom J
,
Stramer S
,
Turner K
,
Rossmann SN
,
Lanciotti R
et al.
. 2008.
Development of multiplex PCR-ligase detection reaction assay for detection of West Nile virus.
.
J Clin Microbiol. 46(7):2269-79.
E
Bacolod MD
,
Schemmann GS
,
Giardina SF
,
Paty P
,
Notterman DA
,
Barany F
. 2009.
Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies.
.
Cancer Res. 69(3):723-7.
Huang J
,
Kirk B
,
Favis R
,
Soussi T
,
Paty P
,
Cao W
,
Barany F
. 2002.
An endonuclease/ligase based mutation scanning method especially suited for analysis of neoplastic tissue.
.
Oncogene. 21(12):1909-21.
G
Bacolod MD
,
Barany F
. 2010.
Gene dysregulations driven by somatic copy number aberrations-biological and clinical implications in colon tumors: a paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology.
.
J Mol Diagn. 12(5):552-61.
Wang S
,
Haynes C
,
Barany F
,
Ott J
. 2009.
Genome-wide autozygosity mapping in human populations.
.
Genet Epidemiol. 33(2):172-80.
H
Favis R
,
Huang J
,
Gerry NP
,
Culliford A
,
Paty P
,
Soussi T
,
Barany F
. 2004.
Harmonized microarray/mutation scanning analysis of TP53 mutations in undissected colorectal tumors.
.
Hum Mutat. 24(1):63-75.
Pincas H
,
Pingle MR
,
Huang J
,
Lao K
,
Paty PB
,
Friedman AM
,
Barany F
. 2004.
High sensitivity EndoV mutation scanning through real-time ligase proofreading.
.
Nucleic Acids Res. 32(19):e148.
L
Cheng Y-W
,
Idrees K
,
Shattock R
,
Khan SA
,
Zeng Z
,
Brennan CW
,
Paty P
,
Barany F
. 2010.
Loss of imprinting and marked gene elevation are 2 forms of aberrant IGF2 expression in colorectal cancer.
.
Int J Cancer. 127(3):568-77.
M
Forslund A
,
Zeng Z
,
Qin L-X
,
Rosenberg S
,
Ndubuisi MK
,
Pincas H
,
Gerald W
,
Notterman DA
,
Barany F
,
Paty PB
. 2008.
MDM2 gene amplification is correlated to tumor progression but not to the presence of SNP309 or TP53 mutational status in primary colorectal cancers.
.
Mol Cancer Res. 6(2):205-11.
Chen Y-W
,
Wang H
,
Hupert M
,
Witek M
,
Dharmasiri U
,
Pingle MR
,
Barany F
,
Soper SA
. 2012.
Modular microfluidic system fabricated in thermoplastics for the strain-specific detection of bacterial pathogens.
.
Lab Chip. 12(18):3348-55.
Bacolod MD
,
Barany F
. 2011.
Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition.
.
Ann Surg Oncol. 18(13):3694-700.
Pingle MR
,
Granger K
,
Feinberg P
,
Shatsky R
,
Sterling B
,
Rundell M
,
Spitzer E
,
Larone D
,
Golightly LM
,
Barany F
. 2007.
Multiplexed identification of blood-borne bacterial pathogens by use of a novel 16S rRNA gene PCR-ligase detection reaction-capillary electrophoresis assay.
.
J Clin Microbiol. 45(6):1927-35.
Cheng Y-W
,
Shawber C
,
Notterman D
,
Paty P
,
Barany F
. 2006.
Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay.
.
Genome Res. 16(2):282-9.
P
Pingle M
,
Rundell M
,
Das S
,
Golightly LM
,
Barany F
. 2010.
PCR/LDR/universal array platforms for the diagnosis of infectious disease.
.
Methods Mol Biol. 632:141-57.
Overholtzer M
,
Rao PH
,
Favis R
,
Lu X-Y
,
Elowitz MB
,
Barany F
,
Ladanyi M
,
Gorlick R
,
Levine AJ
. 2003.
The presence of p53 mutations in human osteosarcomas correlates with high levels of genomic instability.
.
Proc Natl Acad Sci U S A. 100(20):11547-52.
R
Tsafrir D
,
Bacolod M
,
Selvanayagam Z
,
Tsafrir I
,
Shia J
,
Zeng Z
,
Liu H
,
Krier C
,
Stengel RF
,
Barany F
et al.
. 2006.
Relationship of gene expression and chromosomal abnormalities in colorectal cancer.
.
Cancer Res. 66(4):2129-37.
S
Hashimoto M
,
Barany F
,
Xu F
,
Soper SA
. 2007.
Serial processing of biological reactions using flow-through microfluidic devices: coupled PCR/LDR for the detection of low-abundant DNA point mutations.
.
Analyst. 132(9):913-21.
Bacolod MD
,
Schemmann GS
,
Wang S
,
Shattock R
,
Giardina SF
,
Zeng Z
,
Shia J
,
Stengel RF
,
Gerry N
,
Hoh J
et al.
. 2008.
The signatures of autozygosity among patients with colorectal cancer.
.
Cancer Res. 68(8):2610-21.
Kirk BW
,
Feinsod M
,
Favis R
,
Kliman RM
,
Barany F
. 2002.
Single nucleotide polymorphism seeking long term association with complex disease.
.
Nucleic Acids Res. 30(15):3295-311.
Gao H
,
Huang J
,
Barany F
,
Cao W
. 2007.
Switching base preferences of mismatch cleavage in endonuclease V: an improved method for scanning point mutations.
.
Nucleic Acids Res. 35(1):e2.
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