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Microbiology and Immunology

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Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination.

TitleInositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination.
Publication TypeJournal Article
Year of Publication2019
AuthorsSanchez AM, Garg A, Shuman S, Schwer B
JournalNucleic Acids Res
Volume47
Issue16
Pagination8452-8469
Date Published2019 09 19
ISSN1362-4962
KeywordsAcid Phosphatase, Cleavage And Polyadenylation Specificity Factor, Cytoskeletal Proteins, Gene Deletion, Gene Expression Regulation, Fungal, Inositol Phosphates, Membrane Transport Proteins, Nuclear Proteins, Protein Isoforms, Pyrophosphatases, Regulon, RNA, Long Noncoding, Schizosaccharomyces, Schizosaccharomyces pombe Proteins, Transcription Termination, Genetic
Abstract

Fission yeast phosphate acquisition genes pho1, pho84, and tgp1 are repressed in phosphate-rich medium by transcription of upstream lncRNAs. Here, we show that phosphate homeostasis is subject to metabolite control by inositol pyrophosphates (IPPs), exerted through the 3'-processing/termination machinery and the Pol2 CTD code. Increasing IP8 (via Asp1 IPP pyrophosphatase mutation) de-represses the PHO regulon and leads to precocious termination of prt lncRNA synthesis. pho1 de-repression by IP8 depends on cleavage-polyadenylation factor (CPF) subunits, termination factor Rhn1, and the Thr4 letter of the CTD code. pho1 de-repression by mutation of the Ser7 CTD letter depends on IP8. Simultaneous inactivation of the Asp1 and Aps1 IPP pyrophosphatases is lethal, but this lethality is suppressed by mutations of CPF subunits Ppn1, Swd22, Ssu72, and Ctf1 and CTD mutation T4A. Failure to synthesize IP8 (via Asp1 IPP kinase mutation) results in pho1 hyper-repression. Synthetic lethality of asp1Δ with Ppn1, Swd22, and Ssu72 mutations argues that IP8 plays an important role in essential 3'-processing/termination events, albeit in a manner genetically redundant to CPF. Transcriptional profiling delineates an IPP-responsive regulon composed of genes overexpressed when IP8 levels are increased. Our results establish a novel role for IPPs in cell physiology.

DOI10.1093/nar/gkz567
Alternate JournalNucleic Acids Res
PubMed ID31276588
PubMed Central IDPMC6895273
Grant ListP30 CA008748 / CA / NCI NIH HHS / United States
R01 GM052470 / GM / NIGMS NIH HHS / United States
R35 GM126945 / GM / NIGMS NIH HHS / United States

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