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Database resources for the tuberculosis community.

TitleDatabase resources for the tuberculosis community.
Publication TypeJournal Article
Year of Publication2013
AuthorsLew JM, Mao C, Shukla M, Warren A, Will R, Kuznetsov D, Xenarios I, Robertson BD, Gordon SV, Schnappinger D, Cole ST, Sobral B
JournalTuberculosis (Edinb)
Volume93
Issue1
Pagination12-7
Date Published2013 Jan
ISSN1873-281X
KeywordsDatabases, Genetic, Genome, Bacterial, Genomics, Humans, Internet, Mycobacterium tuberculosis, Tuberculosis
Abstract

Access to online repositories for genomic and associated "-omics" datasets is now an essential part of everyday research activity. It is important therefore that the Tuberculosis community is aware of the databases and tools available to them online, as well as for the database hosts to know what the needs of the research community are. One of the goals of the Tuberculosis Annotation Jamboree, held in Washington DC on March 7th-8th 2012, was therefore to provide an overview of the current status of three key Tuberculosis resources, TubercuList (tuberculist.epfl.ch), TB Database (www.tbdb.org), and Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org). Here we summarize some key updates and upcoming features in TubercuList, and provide an overview of the PATRIC site and its online tools for pathogen RNA-Seq analysis.

DOI10.1016/j.tube.2012.11.003
Alternate JournalTuberculosis (Edinb)
PubMed ID23332401
PubMed Central IDPMC3592388
Grant List1 U41 HG006104-02 / HG / NHGRI NIH HHS / United States
HHSN272200900040C / AI / NIAID NIH HHS / United States
HHSN272200900040C / / PHS HHS / United States
MR/J006874/1 / / Medical Research Council / United Kingdom
U41 HG006104 / HG / NHGRI NIH HHS / United States

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