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Lue N, Sharma A, Mondragón A, Wang JC.  1995.  A 26 kDa yeast DNA topoisomerase I fragment: crystallographic structure and mechanistic implications.. Structure. 3(12):1315-22.
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Edwalds-Gilbert G, Prescott J, Falck-Pedersen E.  1993.  3' RNA processing efficiency plays a primary role in generating termination-competent RNA polymerase II elongation complexes.. Mol Cell Biol. 13(6):3472-80.
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Zi Z, Du S, Zhang L, Wang Y, Ding L, Zhang C, Wang H, Pawlicki J, Cai Y, Yao Y et al..  2023.  Aberrant expression of GOLM1 protects ALK+ anaplastic large cell lymphoma from apoptosis by enhancing BCL-XL stability.. Blood Adv. 7(15):4049-4063.
Ban Y, Dong W, Zhang L, Zhou T, Altiti AS, Ali K, Mootoo DR, Blaho VA, Hla T, Ren Y et al..  2019.  Abrogation of Endogenous Glycolipid Antigen Presentation on Myelin-Laden Macrophages by D-Sphingosine Ameliorates the Pathogenesis of Experimental Autoimmune Encephalomyelitis.. Front Immunol. 10:404.
Cohn EF, Nathan C, Radzioch D, Yu H, Xiang Z, Ding A.  2006.  Abrupt expression of TLR4 in TLR4-deficient macrophages imposes a selective disadvantage: genetic evidence for TLR4-dependent responses to endogenous, nonmicrobial stimuli.. J Immunol. 176(2):1185-94.
Lue NF, Kornberg RD.  1987.  Accurate initiation at RNA polymerase II promoters in extracts from Saccharomyces cerevisiae.. Proc Natl Acad Sci U S A. 84(24):8839-43.
Lue NF, Kornberg RD.  1990.  Accurately initiated, enhancer-dependent transcription by RNA polymerase I in yeast extracts.. J Biol Chem. 265(30):18091-4.
Vandal OH, Nathan CF, Ehrt S.  2009.  Acid resistance in Mycobacterium tuberculosis.. J Bacteriol. 191(15):4714-21.
Vandal OH, Roberts JA, Odaira T, Schnappinger D, Nathan CF, Ehrt S.  2009.  Acid-susceptible mutants of Mycobacterium tuberculosis share hypersusceptibility to cell wall and oxidative stress and to the host environment.. J Bacteriol. 191(2):625-31.
Yang Z, Zhang L, Ottavi S, Geri JB, Perkowski A, Jiang X, Pfau D, Bryk R, Aubé J, Zimmerman M et al..  2025.  ACOD1-mediated lysosomal membrane permeabilization contributes to Mycobacterium tuberculosis-induced macrophage death.. Proc Natl Acad Sci U S A. 122(12):e2425309122.
Luo Q, Ma X, Wahl SM, Bieker JJ, Crossley M, Montaner LJ.  2004.  Activation and repression of interleukin-12 p40 transcription by erythroid Kruppel-like factor in macrophages.. J Biol Chem. 279(18):18451-6.
Hunt DM, Pisco JPedro, Rodgers A, de Chiara C, Zaveri A, Pacholarz KL, Evangelopoulos D, Garza-Garcia A, Ehrt S, Schnappinger D et al..  2026.  Activation of L-histidine biosynthesis as a new antibiotic strategy against Mycobacterium tuberculosis.. Nat Commun. 17(1)
Lue NF, Buchman AR, Kornberg RD.  1989.  Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro.. Proc Natl Acad Sci U S A. 86(2):486-90.
Frank M, Deitsch K.  2006.  Activation, silencing and mutually exclusive expression within the var gene family of Plasmodium falciparum.. Int J Parasitol. 36(9):975-85.
Dzikowski R, Deitsch KW.  2008.  Active transcription is required for maintenance of epigenetic memory in the malaria parasite Plasmodium falciparum.. J Mol Biol. 382(2):288-97.
Ghosh S, Sanchez AM, Schwer B, Prucker I, Jork N, Jessen HJ, Shuman S.  2024.  Activities and genetic interactions of fission yeast Aps1, a Nudix-type inositol pyrophosphatase and inorganic polyphosphatase.. mBio. 15(8):e0108424.
Benjamin B, Garg A, Jork N, Jessen HJ, Schwer B, Shuman S.  2022.  Activities and Structure-Function Analysis of Fission Yeast Inositol Pyrophosphate (IPP) Kinase-Pyrophosphatase Asp1 and Its Impact on Regulation of pho1 Gene Expression.. mBio. 13(3):e0103422.
Sanchez AM, Schwer B, Jork N, Jessen HJ, Shuman S.  2023.  Activities, substrate specificity, and genetic interactions of fission yeast Siw14, a cysteinyl-phosphatase-type inositol pyrophosphatase.. mBio. 14(5):e0205623.
Dantuluri S, Schwer B, Abdullahu L, Damha MJ, Shuman S.  2021.  Activity and substrate specificity of Candida, Aspergillus, and Coccidioides Tpt1: essential tRNA splicing enzymes and potential anti-fungal targets.. RNA. 27(5):616-27.
Vanheer LN, Kafsack BFC.  2021.  Activity Comparison of Epigenetic Modulators against the Hemoprotozoan Parasites Babesia divergens and Plasmodium falciparum.. ACS Infect Dis. 7(8):2277-2284.
Vanheer LN, Zhang H, Lin G, Kafsack BFC.  2020.  Activity of Epigenetic Inhibitors against Plasmodium falciparum Asexual and Sexual Blood Stages.. Antimicrob Agents Chemother. 64(7)
de Carvalho LPedro S, Zhao H, Dickinson CE, Arango NM, Lima CD, Fischer SM, Ouerfelli O, Nathan C, Rhee K.  2010.  Activity-based metabolomic profiling of enzymatic function: identification of Rv1248c as a mycobacterial 2-hydroxy-3-oxoadipate synthase.. Chem Biol. 17(4):323-32.
Weskamp G, Tüshaus J, Li D, Feederle R, Maretzky T, Swendemann S, Falck-Pedersen E, McIlwain DR, Mak TW, Salmon JE et al..  2020.  ADAM17 stabilizes its interacting partner inactive Rhomboid 2 (iRhom2) but not inactive Rhomboid 1 (iRhom1).. J Biol Chem. 295(13):4350-4358.
Lue NF.  2004.  Adding to the ends: what makes telomerase processive and how important is it? Bioessays. 26(9):955-62.
Ingallinella P, Bianchi E, Ladwa NA, Wang Y-J, Hrin R, Veneziano M, Bonelli F, Ketas TJ, Moore JP, Miller MD et al..  2009.  Addition of a cholesterol group to an HIV-1 peptide fusion inhibitor dramatically increases its antiviral potency.. Proc Natl Acad Sci U S A. 106(14):5801-6.